Cacao Matina1-6 Genome v0.9
Analysis Name | Cacao Matina1-6 Genome v0.9 |
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Software | Customized version of the Arachne2 assembler (in-house) |
Source | 454 Titanium STD reads (USDA-ARS, Stoneville) |
Date performed | 2021-03-28 |
Description | Theobroma cacao Matina1-6 v0.9 Preliminary ReleaseFrom this page you can read about the genome sequence assembly statistics and annotation protocol, browse and download the whole v0.9 genome sequence; predicted gene transcripts, their locations and putative function based on homology to known genes in Arabidopsis and SwissProt. You can BLAST your sequences against the genome sequence, and the predicted gene transcripts and peptides. You can search and browse the chromosomes, contigs, markers, and genes in GBrowse and view the evidence for each prediction and feature. Genome v0.9 Statistics More Information
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Organisms | Theobroma cacao |
Cacao Genome Sequence (v0.9) | |
Supercontigs (FASTA file, 98MB compressed) | Cacao_genome_v0.9_supercontigs.fa.gz |
Supercontigs w/ masked repeats (FASTA file, 91MB compressed) | Cacao_genome_v0.9_supercontigs_RM.fa.gz |
Supercontigs (GFF3 file, 86MB compressed) | Cacao_genome_v0.9_supercontigs.gff3.gz |
Cacao Genome Genome Annotation (v0.9) |
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Predicted gene transcripts (FASTA file, 21MB compressed) | Cacao_genome_v0.9_transcript.fa.gz |
Predicted gene peptides (FASTA file, 9MB compressed) | Cacao_genome_v0.9_peptide.fa.gz |
Predicted gene models (GFF3 file, 19MB compressed) | Cacao_genome_v0.9_gene.gff3.gz |
Cacao predicted genes blastx vs protein databases. Best hit reports in Excel |
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UniProtKB/Swiss-Prot (14MB) | Cacao_genome_v0.9_vs_sprot.xls |
UniProtKB/TrEMBL (21MB) | Cacao_genome_v0.9_vs_TrEMBL.xls |
TAIR9 (arabidopsis) proteins (28MB) | Cacao_genome_v0.9_vs_arabidopsis.xls |
Prunus persica (peach) v1.0 proteins (35MB) | Cacao_genome_v0.9_vs_peach.xls |
Vitis vinifera (grape) proteins (25MB) | Cacao_genome_v0.9_vs_grape.xls |
Populus trichocarpa (poplar) v2.0 proteins (26MB) | Cacao_genome_v0.9_vs_poplar.xls |
- Genome Browser
- Search Tools
- BLAST your sequences against the cacao genome v0.9 datasets
- View the sytneny between T. cacao cv. Criollo vs T. cacao cv. Matina1-6 in GBrowse_syn
- View the cacao predicted gene KEGG Report
- View the cacao predicated gene GO Report
- CacaoCyc
- DNA Libraries